Books

Short works

Books : reviews

Jonathan Timmis, Peter J. Bentley, eds.
ICARIS 2002: 1st International Conference on Artificial Immune Systems.
University of Kent. 2002

(read but not reviewed)

The conference papers are collected in six sessions: Applications of AIS; Memory and AIS; Self or Non-Self?; Conceptual Papers; Learning Strategies; Hybrids and Augmentations.

Contents

Richard O. Canham, Andy M. Tyrrell. A Multilayered Immune System for Hardware Fault Tolerance within an Embryonic Array. 2002
Kevin P. Anchor, Jesse B. Zydallis, Gregg H. Gunsch, Gary B. Lamont. Extending the Computer Defense Immune System: Network Intrusion Detection with a Multiobjective Evolutionary Programming Approach. 2002
Srividhya Sathyanath, Ferat Sahin. AISIMAM - An Artificial Immune System Based Intelligent Multi-Agent Model and its Application to a Mine Detection Problem. 2002
Alexander O. Tarakanov, Larisa B. Goncharova, Tatyana V. Gupalova, S. V. Kvachev, A. V. Sukhorakov. Immunocomputing for Bioarrays. 2002
Renato A. Krohling, Yuchao Zhou, Andy M. Tyrrell. Evolving FPGA-based Robot Controllers using an Evolutionary Algorithm. 2002
Emma Hart, Peter Ross. Exploiting the Analogy Between Immunology and Sparse Distributed Memories: A System for Clustering Nonistationary Data Immune Memory in the Dynamic Clonal Selection Algorithm. 2002
Jungwon Kim, Peter J. Bentley. Immune Memory in the Dynamic Clonal Selection Algorithm. 2002
Slawomir Wierzchon, U. Kuzelewska. Stable Clusters Formation in an Artificial Immune System. 2002
Mark Neal. An Artificial Immune System for Continuous Analysis of Time-Varying Data. 2002
Modupe Ayara, Jonathan Timmis, Rogerio de Lemos, Leandro Nunes de Castro, Ross Duncan. Negative Selection: How to Generate Detectors. 2002
Shantanu Singh. Anomaly Detection Using Negative Selection Based on the r-contiguous Matching Rule. 2002
Hugues Bersini. Self-Assertion versus Self-Recognition: A Tribute to Francisco Varela. 2002
Patricia A. Vargas, Leandro Nunes de Castro, Fernando J. Von Zuben. Artificial Immune Systems as Complex Adaptive Systems. 2002
Johan Kaers, Richard Wheeler, Herman Verrelst. Building a Robust Distributed Artificial Immune Systems. 2002
Dennis L. Chao, Stephanie Forrest. Information Immune Systems. 2002
Uwe Aickelin, Steve Cayzer. The Danger Theory and Its Application to Artificial Immune Systems. 2002
Gaurav Marwah, Lois Boggess. Artificial Immune Systems for Classification: Some Issues. 2002
Steve Cayzer, Uwe Aickelin. On the Effects of Idiotypic Interactions for Recomendation Communities in Artificial Immune Systems. 2002
Tom Morrison, Uwe Aickelin. An Artificial Immune System as a Recommender for Web Sites. 2002
Andrew Watkins, Jonathan Timmis. Artificial Immune Recognition System (AIRS): Revisions and Refinements. 2002
Jungwon Kim, Peter J. Bentley. A Model of Gene Library Evolution in the Dynamic Clonal Selection Algorithm. 2002
Alessio Gaspar, Beat Hirsbrunner. From Optimization to Learning in Learning in Changing Environments: The Pittsburgh Immune Classifier System. 2002
Fabio Gonzalez, Dipankar Dasgupta. Neuro-Immune and Self-Organising Map Approaches to Anomaly Detection: A Comparison. 2002
Carlos A. Coello Coello, Nareli Cruz Cortes. An Approach to Solve Multiobjective Optimization Problems Based on an Artificial Immune System. 2002
Svetlana P. Sokolova, Ludmila A. Sokolova. Immunocomputing for Complex Interval Objects. 2002
Leandro Nunes de Castro, Jonathan Timmis. Hierarchy and Convergence of Immune Networks: Basic Ideas and Preliminary Results. 2002

Leandro Nunes de Castro, Jonathan Timmis.
Artificial Immune Systems: a new computational intelligence approach.
Springer. 2002

(read but not reviewed)

Jonathan Timmis, Peter J. Bentley, Emma Hart, eds.
ICARIS 2003: 2nd International Conference on Artificial Immune Systems.
Springer. 2003

(read but not reviewed)

Contents

Carlos A. Coello Coello, Daniel Cortes Rivera, Nareli Cruz Cortes. Use of AIS for Job Shop Scheduling. 2003
Esma Bendiab, Souham Meshoul, Mohamed Batouche. An AIS for Multi-Modality Image Alignment. 2003
George Barreto Bezerra, Leandro Nunes de Castro. Bioinformatics data analysis using an Artificial Immune Network. 2003
Dan W. Taylor, David W. Corne. An Investigation of Negative Selection for Fault Detection in Refrigeration Systems. 2003
Emma Hart, Peter Ross, Andrew Webb, Alistair Lawson. A Role for Immunology in "Next Generation" Robot Controllers. 2003
Henry Y. K. Lau, Vicky W. K. Wong. An Immunological Control Framework for Automated Material Handling. 2003
Patricia A. Vargas, Leandro Nunes de Castro, Roberto Michelan, Fernando J. Von Zuben. An Immune Learning Classifier Network for Automated Navigation. 2003
Peter May, Keith C. Mander, Jonathan Timmis. Software vaccination: An AIS Approach. 2003
Paolo Tieri, Silvana Valensin, Claudio Franceschi, C. Morandi, Gastone C. Castellani. Memory and Selectivity in Evolving Scale-free Immune Networks. 2003
Larisa B. Goncharova, Yuri Melnikov, Alexander O. Tarakanov. Biomolecular Immunocomputing. 2003
Nikolaos D. Atreas, Costas G. Karanikas, Alexander O. Tarakanov. Signal Processing by an Immune Type Tree Transform. 2003
Ludmila A. Sokolova. Index Design by Immunocomputing. 2003
Doheon Lee, Jungja Kim, Mina Jeong, Yonggwan Won, Seon Hee Park, Kwang-Hyung Lee. Immune Based Framework for Exploratory Information Retrieval from the Semantic Web. 2003
Julie Greensmith, Steve Cayzer. An AIS Approach to Semantic Document Classification. 2003
Uwe Aickelin, Peter J. Bentley, Steve Cayzer, Jungwon Kim, Julie McLeod. Danger Theory: The Missing Link between AIS and IDS. 2003
Andrew Secker, Alex A. Freitas, Jonathan Timmis. A Danger Theory Approach to Web Mining. 2003
Mark Neal. Meta-Stable Memory in an AIS Network. 2003
Jennifer A. White, Simon M. Garrett. Improved Pattern Recognition with Artifical Clonal Selection?. 2003
Emma Hart, Peter Ross. Improving SOSDM: Inspirations from Danger Theory. 2003
Susan Stepney, John A. Clark, Colin G. Johnson, Derek Partridge, Robert E. Smith. AIS and the Grand Challenge for Non-Classical Computation. 2003
full paper
Simon M. Garrett. A Paratope is not an Epitope: Implications for Immune Network Models and Clonal Selection. 2003
Alex A. Freitas, Jonathan Timmis. Revisiting the Foundations of AIS: A Problem Oriented Perspective. 2003
Hyi Taek Ceong, Young-il Kim, Doheon Lee, Kwang-Hyung Lee. Complementary Dual Detectors for Effective Classification. 2003
Fernando Esponda, Stephanie Forrest, Paul Helman. The Crossover Closure and Partial Match Detection. 2003
Fabio Gonzalez, Dipankar Dasgupta, Luis Fernado Nino. A Randomised Real Valued Negative Selection Algorithm. 2003
Joanne H. Walker, Simon M. Garrett. Dynamic Function Optimisation: Comparing the Performance of CS and ES. 2003
Johan Kaers, Richard Wheeler, Herman Verrelst. Effect of Antibody Morphology on Non-self Detection. 2003
Claudio Franceschi. The Immune System as a Cognitive System: New Perspectives for Information Technology Society. 2003
(invited talk: abstract)

Giuseppe Nicosia, Vincenzo Cutello, Peter J. Bentley, Jonathan Timmis, eds.
ICARIS 2004: 3rd International Conference on Artificial Immune Systems, Catania, Sicily.
Springer. 2004

(read but not reviewed)

Contents

Dipankar Dasgupta, Kalmanjie KrishnaKumar, D. Wong, M. Berry. Negative selection algorithm for aircraft fault detection. 2004
George Barreto Bezerra, Leandro Nunes de Castro, Fernando J. Von Zuben. A hierarchical immune network applied to gene expression data. 2004
Guan-Chun Luh, Chun-Yin Wu, Wei-Chong Chen. Artificial Immun Regulation (AIR) for model-based fault diagnosis. 2004
Adem Kalinli. Optimal circuit design using immune algorithm. 2004
Susan Stepney, Robert E. Smith, Jonathan Timmis, Andy M. Tyrrell. Towards a conceptual framework for artificial immune systems. 2004
full paper
Henry Y. K. Lau, Vicky W. K. Wong. Immunologic responses manipulation of AIS agents. 2004
Andrew N. W. Hone, Johnny Kelsey. Optima, extrema, and artificial immune systems. 2004
analysing AIS algorithms with dynamical systems techniques; possible fractal basins of attraction
Albert Ko, Henry Y. K. Lau, T. L. Lau. An immuno control framework for decentralized mechatronic control. 2004
Michael Krautmacher, Werner Dilger. AIS based robot navigation in a rescue scenario. 2004
Guan-Chun Luh, Wei-Wen Liu. Reactive immune network based mobile robot navigation. 2004
Peter J. Bentley, Jonathan Timmis. A fractal immune network. 2004
fractal proteins and artificial immune networks
Nikolaos Nanas, Victoria S. Uren, Anne de Roeck. Nootropia: a user profiling model based on a self-organising term network. 2004
Anjum Iqbal, Mohd Aizaini Maarof. Towards danger theory based artificial APC model: novel metaphor for danger susceptible data codons. 2004
Fernando Esponda, Elena S. Ackley, Stephanie Forrest, Paul Helman. Online negative databases. 2004
storing negative information only, as an additional security mechanism
Pedro A. Reche, Ellis L. Reinherz. Definition of MHC supertypes through clustering of MHC peptide binding repetoires. 2004
Sudipto Saha, G. P. S. Raghava. BcePred: prediction of continuous B-cell epitopes in antigenic sequences using physico-chemical properties. 2004
Dokyun Na, Inho Park, Kwang-Hyung Lee, Doheon Lee. Integration of immune models using Petri Nets. 2004
using continuous Petri Nets to help model complicated biological systems
Claus Lundegaarde, Morten Nielsen, Kasper Lamberth, Peder Worning, Christina Sylvester-Hvid, Soren Buus, Soren Brunak, Ole Lund. MHC class I epitope binding prediction trained on small data sets. 2004
Mario Villalobos-Arias, Carlos A. Coello Coello, Onesimo Hernandez-Lerma. Convergence analysis of a multiobjective artificial immune system algorithm. 2004
MISA does not converge; MISA with elitism converges
Alexander O. Tarakanov, Yuri A. Tarakanov. A comparison of immune and neural computing for two real-life tasks of pattern recognition. 2004
Gyorgy Cserey, Wolfgang Porod, Tamas Roska. An artificial immune system based visual analysis model and its real-time terrain surveillance application. 2004
Vincenzo Cutello, Giuseppe Nicosia, Mario Pavone. Exploring the capability of immune algorithms: a characterization of hypermutation operators. 2004
Philipp H. Mohr, Nick Ryan, Jonathan Timmis. Exploiting immunological properties for ubiquitous computing systems. 2004
data reduction of GPS tracking data
Oscar M. Alonso, Luis Fernado Nino, Marcos Velez. A robust immune based approach to the iterated Prisoner's Dilemma. 2004
X. Zhang, Gabriel Dragffy, A. G. Pipe, Q. M. Zhu. Artificial innate immune system: an instant defence layer of embryonics. 2004
hardware fault detection and recovery
Uwe Aickelin, Julie Greensmith, Jamie Twycross. Immune system approaches to intrusion detection: a review. 2004
Yoshihiko Hasegawa, Hitoshi Iba. Multimodal search with immune based genetic programming. 2004
Slavisa Sarafijanovic, Jean-Yves Le Boudec. An artificial immune system for misbehaviour detection in mobile ad-hoc networks with virtual thymus, clustering, danger signal, and memory detectors. 2004
adaptive negative selection using a "danger signal" to decide what is the current "self"
Niloy Ganguly, Andreas Deutsch. Developing efficient search algorithms for P2P networks using proliferation and mutation. 2004
Marcos Velez, Luis Fernado Nino, Oscar M. Alonso. A game-theoretic approach to artificial immune networks. 2004
William O. Wilson, Simon M. Garrett. Modelling immune memory for prediction and computation. 2004
telomere-inspired lifetime model
Christian Jacob, Julius Litorco, Leo Lee. Immunity through swarms: agent-based simulations of the human immune system. 2004
a breve model of an imune response
Emma Hart, Peter Ross. Studies on the implications of shape-space models for idiotypic networks. 2004
exploration of Bersini's idiotypic network model, including asymmtric binding response, multiple binding sites
Andrew Watkins, Jonathan Timmis. Exploiting parallelism inherent in AIRS, and artificial immune classifier. 2004
parallel and distributed implementations
Alan S. Perelson. An overview of computational and theoretical immunology. 2004
(invited talk: extended abstract)

Christian Jacob, Marcin L. Pilat, Peter J. Bentley, Jonathan Timmis, eds.
ICARIS 2005: 4th International Conference on Artificial Immune Systems, Banff, Canada.
Springer. 2005

(read but not reviewed)

Contents

Peter J. Bentley, Gordana Novakovic, Anthony Ruto. Fugue: An Interactive Immersive Audiovisualisation and Artwork Using an Artificial Immune System. 2005
Vincenzo Cutello, Giuseppe Narzisi, Giuseppe Nicosia, Mario Pavone. Clonal Selection Algorithms: A Comparative Case Study Using Effective Mutation Potentials. 2005
Emma Hart. Not All Balls Are Round: An Investigation of Alternative Recognition-Region Shapes. 2005
John Newborough, Susan Stepney. A Generic Framework for Population-Based Algorithms, Implemented on Multiple FPGAs. 2005
Henry Y. K. Lau, Eugene Y. C. Wong. An AIS-Based Dynamic Routing (AISDR) Framework. 2005
Larisa B. Goncharova, Yannick Jacques, Carlos Martin-Vide, Alexander O. Tarakanov, Jonathan Timmis. Biomolecular Immune-Computer: Theoretical Basis and Experimental Simulator. 2005
Steve Cayzer, James E. Smith, James A. R. Marshall, Tim Kovacs. What Have Gene Libraries Done for AIS?. 2005
Hugues Bersini. Why the First Glass of Wine Is Better Than the Seventh. 2005
Jamie Twycross, Uwe Aickelin. Towards a Conceptual Framework for Innate Immunity. 2005
Paul S. Andrews, Jonathan Timmis. Inspiration for the Next Generation of Artificial Immune Systems. 2005
Peter J. Bentley, Julie Greensmith, Supiya Ujjin. Two Ways to Grow Tissue for Artificial Immune Systems. 2005
Julie Greensmith, Uwe Aickelin, Steve Cayzer. Introducing Dendritic Cells as a Novel Immune-Inspired Algorithm for Anomaly Detection. 2005
Jungwon Kim, William O. Wilson, Uwe Aickelin, Julie McLeod. Cooperative Automated Worm Response and Detection ImmuNe ALgorithm (CARDINAL) Inspired by T-Cell Immunity and Tolerance. 2005
Dokyun Na, Doheon Lee. Mathematical Modeling of Immune Suppression. 2005
Martin J. Robbins, Simon M. Garrett. Evaluating Theories of Immunological Memory Using Large-Scale Simulations. 2005
Maoguo Gong, Licheng Jiao, Fang Liu, Haifeng Du. The Quaternion Model of Artificial Immune Response. 2005
Zaiyi Guo, Joc Cing Tay. A Comparative Study on Modeling Strategies for Immune System Dynamics Under HIV-1 Infection. 2005
Nareli Cruz Cortes, Daniel Trejo-Perez, Carlos A. Coello Coello. Handling Constraints in Global Optimization Using an Artificial Immune System. 2005
Fabio Freschi, Maurizio Repetto. Multiobjective Optimization by a Modified Artificial Immune System Algorithm. 2005
Thomas Stibor, Jonathan Timmis, Claudia Eckert. A Comparative Study of Real-Valued Negative Selection to Statistical Anomaly Detection Techniques. 2005
Terri Oda, Tony White. Immunity from Spam: An Analysis of an Artificial Immune System for Junk Email Detection. 2005
George Barreto Bezerra, Tiago V. Barra, Leandro Nunes de Castro, Fernando J. Von Zuben. Adaptive Radius Immune Algorithm for Data Clustering. 2005
Yangyang Li, Licheng Jiao. Quantum-Inspired Immune Clonal Algorithm. 2005
Edward Clark, Andrew N. W. Hone, Jonathan Timmis. A Markov Chain Model of the B-Cell Algorithm. 2005
Inho Park, Dokyun Na, Kwang-Hyung Lee, Doheon Lee. Fuzzy Continuous Petri Net-Based Approach for Modeling Helper T Cell Differentiation. 2005
Bruce C. Trapnell Jr. A Peer-to-Peer Blacklisting Strategy Inspired by Leukocyte-Endothelium Interaction. 2005
Zejun Wu, Yiwen Liang. Self-regulating Method for Model Library Based Artificial Immune Systems. 2005
Anjum Iqbal, Mohd Aizaini Maarof. Polymorphism and Danger Susceptibility of System Call DASTONs. 2005
Albert Ko, Henry Y. K. Lau, T. L. Lau. General Suppression Control Framework: Application in Self-balancing Robots. 2005
Marcelo F. Caetano, Jonatas Manzolli, Fernando J. Von Zuben. Application of an Artificial Immune System in a Compositional Timbre Design Technique. 2005
Modupe Ayara, Jonathan Timmis, Rogerio de Lemos, Simon Forrest. Immunising Automated Teller Machines. 2005
Jose Carlos L. Pinto, Fernando J. Von Zuben. Fault Detection Algorithm for Telephone Systems Based on the Danger Theory. 2005
Dongmei Fu, Deling Zheng, Ying Chen. Design and Simulation of a Biological Immune Controller Based on Improved Varela Immune Network Model. 2005
Zi Xuan Ong, Joc Cing Tay, Chee Keong Kwoh. Applying the Clonal Selection Principle to Find Flexible Job-Shop Schedules. 2005
Seral Sahan, Kemal Polat, Halife Kodaz, Salih Gunes. The Medical Applications of Attribute Weighted Artificial Immune System (AWAIS): Diagnosis of Heart and Diabetes Diseases. 2005
Pablo D. Castro, Guilherme P. Coelho, Marcelo F. Caetano, Fernando J. Von Zuben. Designing Ensembles of Fuzzy Classification Systems: An Immune-Inspired Approach. 2005
Emma Hart, Jonathan Timmis. Application Areas of AIS: The Past, The Present and The Future. 2005

Mathieu S. Capcarrere, Alex A. Freitas, Peter J. Bentley, Colin G. Johnson, Jonathan Timmis.
Advances in Artificial Life, ECAL2005: 8th European Conference on Artificial Life, Canterbury, UK.
Springer. 2005

(read but not reviewed)

Darren R. Flower, Jonathan Timmis, eds.
in silico Immunology.
Springer. 2007

(read but not reviewed)

Contents

Adrian Robins. Innate and Adaptive Immunity. 2007
Paul D. Taylor, Darren R. Flower. Immunoinformatics and Computational Vaccinology: a brief introduction. 2007
Jonathan Timmis, Paul S. Andrews. A Beginners Guide to Artificial Imune Systems. 2007
Ha Youn Lee, Alan S. Perelson. Computational models of B call and T cell receptors. 2007
Simon M. Garrett, Martin J. Robbins, Joanne H. Walker, William O. Wilson, Uwe Aickelin. Modelling immunological memory. 2007
Paolo Tieri, Gastone C. Castellani, Daniel Remondini, Silvana Valensin, Jonathan Loroni, Stefano Salvioli, Claudio Franceschi. Capturing degeneracy in the immune system. 2007
Paul S. Andrews, Jonathan Timmis. Alternative inspiration for Artificial Immune Systems: exploiting Cohen's cognitive immune model. 2007
Channa K. Hattotuwagama, Pingping Guan, Matthew Davies, Debra J. Taylor, Valerie Walshe, Shelley L. Hemsley, Christopher Toseland, Irini A. Doytchinova, Persephone Borrow, Darren R. Flower. Empirical, AI, and QSAR approaches to peptide-MHC binding prediction. 2007
Jose A. M. Borghans, Can Kesmir, Rob J. de Boer. MHC diversity in individuals and populations. 2007
Pingping Guan, Irini A. Doytchinova, Darren R. Flower. Identifying Major Histocompatibility Complex supertypes. 2007
Vincenzo Cutello, Giuseppe Nicosia. Biomolecular structure prediction using immune inspired algorithms. 2007
Susan Stepney. Embodiment. 2007
Denise Kirschner. The multi-scale immune response to pathogens: M. tuberculosis as an example. 2007
Mark Neal, Bruce C. Trapnell Jr. Go Dutch: exploit interactions and environments with Artificial Immune Systems. 2007
Andrew Watkins. Immune inspired learning in a distributed environment. 2007
Andrew N. W. Hone, Hugo van den Berg. Mathematical analysis of Artificial Immune System dynamics and performance. 2007
Melvin Cohn. Conceptualizing the self-nonself discrimination by the vertebrate immune system. 2007

Paul S. Andrews, Jonathan Timmis, Nick D. L. Owens, Uwe Aickelin, Emma Hart, Andrew N. W. Hone, Andy M. Tyrrell.
ICARIS 2009: 8th International Conference on Artificial Immune Systems, York, UK.
Springer. 2009

(read but not reviewed)