author : Jonathan Timmis

The conference papers are collected in six sessions: Applications of AIS; Memory and AIS; Self or Non-Self?; Conceptual Papers; Learning Strategies; Hybrids and Augmentations.

Contents

• Richard O. Canham, Andy M. Tyrrell.

A Multilayered Immune System for Hardware Fault Tolerance within an Embryonic Array

• Kevin P. Anchor, Jesse B. Zydallis, Gregg H. Gunsch, Gary B. Lamont.

Extending the Computer Defense Immune System: Network Intrusion Detection with a Multiobjective Evolutionary Programming Approach

• Srividhya Sathyanath, Ferat Sahin.

AISIMAM - An Artificial Immune System Based Intelligent Multi-Agent Model and its Application to a Mine Detection Problem

• Alexander O. Tarakanov, Larisa B. Goncharova, Tatyana V. Gupalova, S. V. Kvachev, A. V. Sukhorakov.

Immunocomputing for Bioarrays

• Renato A. Krohling, Yuchao Zhou, Andy M. Tyrrell.

Evolving FPGA-based Robot Controllers using an Evolutionary Algorithm

• Emma Hart, Peter Ross.

Exploiting the Analogy Between Immunology and Sparse Distributed Memories: A System for Clustering Nonistationary Data Immune Memory in the Dynamic Clonal Selection Algorithm

• Jungwon Kim, Peter J. Bentley.

Immune Memory in the Dynamic Clonal Selection Algorithm

• Slawomir Wierzchon, U. Kuzelewska.

Stable Clusters Formation in an Artificial Immune System

• Mark Neal.

An Artificial Immune System for Continuous Analysis of Time-Varying Data

• Modupe Ayara, Jonathan Timmis, Rogerio de Lemos, Leandro Nunes de Castro, Ross Duncan.

Negative Selection: How to Generate Detectors

• Shantanu Singh.

Anomaly Detection Using Negative Selection Based on the r-contiguous Matching Rule

• Hugues Bersini.

Self-Assertion versus Self-Recognition: A Tribute to Francisco Varela

• Patricia A. Vargas, Leandro Nunes de Castro, Fernando J. Von Zuben.

Artificial Immune Systems as Complex Adaptive Systems

• Johan Kaers, Richard Wheeler, Herman Verrelst.

Building a Robust Distributed Artificial Immune Systems

• Dennis L. Chao, Stephanie Forrest.

Information Immune Systems

• Uwe Aickelin, Steve Cayzer.

The Danger Theory and Its Application to Artificial Immune Systems

• Gaurav Marwah, Lois Boggess.

Artificial Immune Systems for Classification: Some Issues

• Steve Cayzer, Uwe Aickelin.

On the Effects of Idiotypic Interactions for Recomendation Communities in Artificial Immune Systems

• Tom Morrison, Uwe Aickelin.

An Artificial Immune System as a Recommender for Web Sites

• Andrew Watkins, Jonathan Timmis.

Artificial Immune Recognition System (AIRS): Revisions and Refinements

• Jungwon Kim, Peter J. Bentley.

A Model of Gene Library Evolution in the Dynamic Clonal Selection Algorithm

• Alessio Gaspar, Beat Hirsbrunner.

From Optimization to Learning in Learning in Changing Environments: The Pittsburgh Immune Classifier System

• Fabio Gonzalez, Dipankar Dasgupta.

Neuro-Immune and Self-Organising Map Approaches to Anomaly Detection: A Comparison

• Carlos A. Coello Coello, Nareli Cruz Cortes.

An Approach to Solve Multiobjective Optimization Problems Based on an Artificial Immune System

• Svetlana P. Sokolova, Ludmila A. Sokolova.

Immunocomputing for Complex Interval Objects

• Leandro Nunes de Castro, Jonathan Timmis.

Hierarchy and Convergence of Immune Networks: Basic Ideas and Preliminary Results

Contents

• Carlos A. Coello Coello, Daniel Cortes Rivera, Nareli Cruz Cortes.

Use of AIS for Job Shop Scheduling

• Esma Bendiab, Souham Meshoul, Mohamed Batouche.

An AIS for Multi-Modality Image Alignment

• George Barreto Bezerra, Leandro Nunes de Castro.

Bioinformatics data analysis using an Artificial Immune Network

• Dan W. Taylor, David W. Corne.

An Investigation of Negative Selection for Fault Detection in Refrigeration Systems

• Emma Hart, Peter Ross, Andrew Webb, Alistair Lawson.

A Role for Immunology in "Next Generation" Robot Controllers

• Henry Y. K. Lau, Vicky W. K. Wong.

An Immunological Control Framework for Automated Material Handling

• Patricia A. Vargas, Leandro Nunes de Castro, Roberto Michelan, Fernando J. Von Zuben.

An Immune Learning Classifier Network for Automated Navigation

• Peter May, Keith C. Mander, Jonathan Timmis.

Software vaccination: An AIS Approach

• Paolo Tieri, Silvana Valensin, Claudio Franceschi, C. Morandi, Gastone C. Castellani.

Memory and Selectivity in Evolving Scale-free Immune Networks

• Larisa B. Goncharova, Yuri Melnikov, Alexander O. Tarakanov.

Biomolecular Immunocomputing

• Nikolaos D. Atreas, Costas G. Karanikas, Alexander O. Tarakanov.

Signal Processing by an Immune Type Tree Transform

• Ludmila A. Sokolova.

Index Design by Immunocomputing

• Doheon Lee, Jungja Kim, Mina Jeong, Yonggwan Won, Seon Hee Park, Kwang-Hyung Lee.

Immune Based Framework for Exploratory Information Retrieval from the Semantic Web

• Julie Greensmith, Steve Cayzer.

An AIS Approach to Semantic Document Classification

• Uwe Aickelin, Peter J. Bentley, Steve Cayzer, Jungwon Kim, Julie McLeod.

Danger Theory: The Missing Link between AIS and IDS

• Andrew Secker, Alex A. Freitas, Jonathan Timmis.

A Danger Theory Approach to Web Mining

• Mark Neal.

Meta-Stable Memory in an AIS Network

• Jennifer A. White, Simon M. Garrett.

Improved Pattern Recognition with Artifical Clonal Selection?

• Emma Hart, Peter Ross.

Improving SOSDM: Inspirations from Danger Theory

• Susan Stepney, John A. Clark, Colin G. Johnson, Derek Partridge, Robert E. Smith.

AIS and the Grand Challenge for Non-Classical Computation

full paper

• Simon M. Garrett.

A Paratope is not an Epitope: Implications for Immune Network Models and Clonal Selection

• Alex A. Freitas, Jonathan Timmis.

Revisiting the Foundations of AIS: A Problem Oriented Perspective

• Hyi Taek Ceong, Young-il Kim, Doheon Lee, Kwang-Hyung Lee.

Complementary Dual Detectors for Effective Classification

• Fernando Esponda, Stephanie Forrest, Paul Helman.

The Crossover Closure and Partial Match Detection

• Fabio Gonzalez, Dipankar Dasgupta, Luis Fernado Nino.

A Randomised Real Valued Negative Selection Algorithm

• Joanne H. Walker, Simon M. Garrett.

Dynamic Function Optimisation: Comparing the Performance of CS and ES

• Johan Kaers, Richard Wheeler, Herman Verrelst.

Effect of Antibody Morphology on Non-self Detection

• Claudio Franceschi.

The Immune System as a Cognitive System: New Perspectives for Information Technology Society

(invited talk: abstract)

Contents

• Dipankar Dasgupta, Kalmanjie KrishnaKumar, D. Wong, M. Berry.

Negative selection algorithm for aircraft fault detection

• George Barreto Bezerra, Leandro Nunes de Castro, Fernando J. Von Zuben.

A hierarchical immune network applied to gene expression data

• Guan-Chun Luh, Chun-Yin Wu, Wei-Chong Chen.

Artificial Immun Regulation (AIR) for model-based fault diagnosis

• Adem Kalinli.

Optimal circuit design using immune algorithm

• Susan Stepney, Robert E. Smith, Jonathan Timmis, Andy M. Tyrrell.

Towards a conceptual framework for artificial immune systems

full paper

• Henry Y. K. Lau, Vicky W. K. Wong.

Immunologic responses manipulation of AIS agents

• Andrew N. W. Hone, Johnny Kelsey.

Optima, extrema, and artificial immune systems

analysing AIS algorithms with dynamical systems techniques; possible fractal basins of attraction

• Albert Ko, Henry Y. K. Lau, T. L. Lau.

An immuno control framework for decentralized mechatronic control

• Michael Krautmacher, Werner Dilger.

AIS based robot navigation in a rescue scenario

• Guan-Chun Luh, Wei-Wen Liu.

Reactive immune network based mobile robot navigation

• Peter J. Bentley, Jonathan Timmis.

A fractal immune network

fractal proteins and artificial immune networks

• Nikolaos Nanas, Victoria S. Uren, Anne de Roeck.

Nootropia: a user profiling model based on a self-organising term network

• Anjum Iqbal, Mohd Aizaini Maarof.

Towards danger theory based artificial APC model: novel metaphor for danger susceptible data codons

• Fernando Esponda, Elena S. Ackley, Stephanie Forrest, Paul Helman.

Online negative databases

storing negative information only, as an additional security mechanism

• Pedro A. Reche, Ellis L. Reinherz.

Definition of MHC supertypes through clustering of MHC peptide binding repetoires

• Sudipto Saha, G. P. S. Raghava.

BcePred: prediction of continuous B-cell epitopes in antigenic sequences using physico-chemical properties

• Dokyun Na, Inho Park, Kwang-Hyung Lee, Doheon Lee.

Integration of immune models using Petri Nets

using continuous Petri Nets to help model complicated biological systems

• Claus Lundegaarde, Morten Nielsen, Kasper Lamberth, Peder Worning, Christina Sylvester-Hvid, Soren Buus, Soren Brunak, Ole Lund.

MHC class I epitope binding prediction trained on small data sets

• Mario Villalobos-Arias, Carlos A. Coello Coello, Onesimo Hernandez-Lerma.

Convergence analysis of a multiobjective artificial immune system algorithm

MISA does not converge; MISA with elitism converges

• Alexander O. Tarakanov, Yuri A. Tarakanov.

A comparison of immune and neural computing for two real-life tasks of pattern recognition

• Gyorgy Cserey, Wolfgang Porod, Tamas Roska.

An artificial immune system based visual analysis model and its real-time terrain surveillance application

• Vincenzo Cutello, Giuseppe Nicosia, Mario Pavone.

Exploring the capability of immune algorithms: a characterization of hypermutation operators

• Philipp H. Mohr, Nick Ryan, Jonathan Timmis.

Exploiting immunological properties for ubiquitous computing systems

data reduction of GPS tracking data

• Oscar M. Alonso, Luis Fernado Nino, Marcos Velez.

A robust immune based approach to the iterated Prisoner's Dilemma

• X. Zhang, Gabriel Dragffy, A. G. Pipe, Q. M. Zhu.

Artificial innate immune system: an instant defence layer of embryonics

hardware fault detection and recovery

• Uwe Aickelin, Julie Greensmith, Jamie Twycross.

Immune system approaches to intrusion detection: a review

• Yoshihiko Hasegawa, Hitoshi Iba.

Multimodal search with immune based genetic programming

• Slavisa Sarafijanovic, Jean-Yves Le Boudec.

An artificial immune system for misbehaviour detection in mobile ad-hoc networks with virtual thymus, clustering, danger signal, and memory detectors

adaptive negative selection using a "danger signal" to decide what is the current "self"

• Niloy Ganguly, Andreas Deutsch.

Developing efficient search algorithms for P2P networks using proliferation and mutation

• Marcos Velez, Luis Fernado Nino, Oscar M. Alonso.

A game-theoretic approach to artificial immune networks

• William O. Wilson, Simon M. Garrett.

Modelling immune memory for prediction and computation

telomere-inspired lifetime model

• Christian Jacob, Julius Litorco, Leo Lee.

Immunity through swarms: agent-based simulations of the human immune system

a breve model of an imune response

• Emma Hart, Peter Ross.

Studies on the implications of shape-space models for idiotypic networks

exploration of Bersini's idiotypic network model, including asymmtric binding response, multiple binding sites

• Andrew Watkins, Jonathan Timmis.

Exploiting parallelism inherent in AIRS, and artificial immune classifier

parallel and distributed implementations

• Alan S. Perelson.

An overview of computational and theoretical immunology

(invited talk: extended abstract)

Contents

• Peter J. Bentley, Gordana Novakovic, Anthony Ruto.

Fugue: An Interactive Immersive Audiovisualisation and Artwork Using an Artificial Immune System

• Vincenzo Cutello, Giuseppe Narzisi, Giuseppe Nicosia, Mario Pavone.

Clonal Selection Algorithms: A Comparative Case Study Using Effective Mutation Potentials

• Emma Hart.

Not All Balls Are Round: An Investigation of Alternative Recognition-Region Shapes

• John Newborough, Susan Stepney.

A Generic Framework for Population-Based Algorithms, Implemented on Multiple FPGAs

• Henry Y. K. Lau, Eugene Y. C. Wong.

An AIS-Based Dynamic Routing (AISDR) Framework

• Larisa B. Goncharova, Yannick Jacques, Carlos Martin-Vide, Alexander O. Tarakanov, Jonathan Timmis.

Biomolecular Immune-Computer: Theoretical Basis and Experimental Simulator

• Steve Cayzer, James E. Smith, James A. R. Marshall, Tim Kovacs.

What Have Gene Libraries Done for AIS?

• Hugues Bersini.

Why the First Glass of Wine Is Better Than the Seventh

• Jamie Twycross, Uwe Aickelin.

Towards a Conceptual Framework for Innate Immunity

• Paul S. Andrews, Jonathan Timmis.

Inspiration for the Next Generation of Artificial Immune Systems

• Peter J. Bentley, Julie Greensmith, Supiya Ujjin.

Two Ways to Grow Tissue for Artificial Immune Systems

• Julie Greensmith, Uwe Aickelin, Steve Cayzer.

Introducing Dendritic Cells as a Novel Immune-Inspired Algorithm for Anomaly Detection

• Jungwon Kim, William O. Wilson, Uwe Aickelin, Julie McLeod.

Cooperative Automated Worm Response and Detection ImmuNe ALgorithm (CARDINAL) Inspired by T-Cell Immunity and Tolerance

• Dokyun Na, Doheon Lee.

Mathematical Modeling of Immune Suppression

• Martin J. Robbins, Simon M. Garrett.

Evaluating Theories of Immunological Memory Using Large-Scale Simulations

• Maoguo Gong, Licheng Jiao, Fang Liu, Haifeng Du.

The Quaternion Model of Artificial Immune Response

• Zaiyi Guo, Joc Cing Tay.

A Comparative Study on Modeling Strategies for Immune System Dynamics Under HIV-1 Infection

• Nareli Cruz Cortes, Daniel Trejo-Perez, Carlos A. Coello Coello.

Handling Constraints in Global Optimization Using an Artificial Immune System

• Fabio Freschi, Maurizio Repetto.

Multiobjective Optimization by a Modified Artificial Immune System Algorithm

• Thomas Stibor, Jonathan Timmis, Claudia Eckert.

A Comparative Study of Real-Valued Negative Selection to Statistical Anomaly Detection Techniques

• Terri Oda, Tony White.

Immunity from Spam: An Analysis of an Artificial Immune System for Junk Email Detection

• George Barreto Bezerra, Tiago V. Barra, Leandro Nunes de Castro, Fernando J. Von Zuben.

Adaptive Radius Immune Algorithm for Data Clustering

• Yangyang Li, Licheng Jiao.

Quantum-Inspired Immune Clonal Algorithm

• Edward Clark, Andrew N. W. Hone, Jonathan Timmis.

A Markov Chain Model of the B-Cell Algorithm

• Inho Park, Dokyun Na, Kwang-Hyung Lee, Doheon Lee.

Fuzzy Continuous Petri Net-Based Approach for Modeling Helper T Cell Differentiation

• Bruce C. Trapnell Jr.

A Peer-to-Peer Blacklisting Strategy Inspired by Leukocyte-Endothelium Interaction

• Zejun Wu, Yiwen Liang.

Self-regulating Method for Model Library Based Artificial Immune Systems

• Anjum Iqbal, Mohd Aizaini Maarof.

Polymorphism and Danger Susceptibility of System Call DASTONs

• Albert Ko, Henry Y. K. Lau, T. L. Lau.

General Suppression Control Framework: Application in Self-balancing Robots

• Marcelo F. Caetano, Jonatas Manzolli, Fernando J. Von Zuben.

Application of an Artificial Immune System in a Compositional Timbre Design Technique

• Modupe Ayara, Jonathan Timmis, Rogerio de Lemos, Simon Forrest.

Immunising Automated Teller Machines

• Jose Carlos L. Pinto, Fernando J. Von Zuben.

Fault Detection Algorithm for Telephone Systems Based on the Danger Theory

• Dongmei Fu, Deling Zheng, Ying Chen.

Design and Simulation of a Biological Immune Controller Based on Improved Varela Immune Network Model

• Zi Xuan Ong, Joc Cing Tay, Chee Keong Kwoh.

Applying the Clonal Selection Principle to Find Flexible Job-Shop Schedules

• Seral Sahan, Kemal Polat, Halife Kodaz, Salih Gunes.

The Medical Applications of Attribute Weighted Artificial Immune System (AWAIS): Diagnosis of Heart and Diabetes Diseases

• Pablo D. Castro, Guilherme P. Coelho, Marcelo F. Caetano, Fernando J. Von Zuben.

Designing Ensembles of Fuzzy Classification Systems: An Immune-Inspired Approach

• Emma Hart, Jonathan Timmis.

Application Areas of AIS: The Past, The Present and The Future

Contents

• Adrian Robins.

Innate and Adaptive Immunity

• Paul D. Taylor, Darren R. Flower.

Immunoinformatics and Computational Vaccinology: a brief introduction

• Jonathan Timmis, Paul S. Andrews.

A Beginners Guide to Artificial Imune Systems

• Ha Youn Lee, Alan S. Perelson.

Computational models of B call and T cell receptors

• Simon M. Garrett, Martin J. Robbins, Joanne H. Walker, William O. Wilson, Uwe Aickelin.

Modelling immunological memory

• Paolo Tieri, Gastone C. Castellani, Daniel Remondini, Silvana Valensin, Jonathan Loroni, Stefano Salvioli, Claudio Franceschi.

Capturing degeneracy in the immune system

• Paul S. Andrews, Jonathan Timmis.

Alternative inspiration for Artificial Immune Systems: exploiting Cohen's cognitive immune model

• Channa K. Hattotuwagama, Pingping Guan, Matthew Davies, Debra J. Taylor, Valerie Walshe, Shelley L. Hemsley, Christopher Toseland, Irini A. Doytchinova, Persephone Borrow, Darren R. Flower.

Empirical, AI, and QSAR approaches to peptide-MHC binding prediction

• Jose A. M. Borghans, Can Kesmir, Rob J. de Boer.

MHC diversity in individuals and populations

• Pingping Guan, Irini A. Doytchinova, Darren R. Flower.

Identifying Major Histocompatibility Complex supertypes

• Vincenzo Cutello, Giuseppe Nicosia.

Biomolecular structure prediction using immune inspired algorithms

• Susan Stepney.

Embodiment

• Denise Kirschner.

The multi-scale immune response to pathogens: M. tuberculosis as an example

• Mark Neal, Bruce C. Trapnell Jr.

Go Dutch: exploit interactions and environments with Artificial Immune Systems

• Andrew Watkins.

Immune inspired learning in a distributed environment

• Andrew N. W. Hone, Hugo van den Berg.

Mathematical analysis of Artificial Immune System dynamics and performance

• Melvin Cohn.

Conceptualizing the self-nonself discrimination by the vertebrate immune system

Contents

• Irun R. Cohen, David Harel.

Two views of a Biology-Computer Science alliance

• Mark Read, Jonathan Timmis, Paul S. Andrews, Vipin Kumar.

A domain model of Experimental Autoimmune Encephalomyelitis

• Andrew N. W. Hone.

On non-standard numerical integration methods for biological oscillators

• Tim Hoverd, Susan Stepney.

Environment Orientation: an architecture for simulating complex systems

• Anthony Nash, Sara Kalvala.

A framework proposition fo cellular locality in Dictyostelium modelled in pi-calculus

• Teodor Ghetiu, Robert Alexander, Paul S. Andrews, Fiona Polack.

Equivalence arguments for complex systems simulations -- a case-study