Philip Garnett, Susan Stepney, Francesca Day, Ottoline Leyser.
Using the CoSMoS Process to Enhance an Executable Model of Auxin Transport Canalisation.

CoSMoS workshop, Odense, Denmark, August 2010 , pp9-32, Luniver Press 2010

Abstract:

We describe our use of the CoSMoS process to structure an incremental change of a biological simulation. The domain is auxin transport canalisation. An existing simulator is refactored to handle aspects of 2D and 3D space more efficiently, and enhanced to include more realistically-shaped plant cells. The CoSMoS process supports clear separation of concerns, allowing us to concentrate on the biological model and the implementation decisions separately. This gives a clear and well-justi fied simulator design that can be validated by biologists, yet still allows efficient implementation.

@inproceedings(SS-CoSMoS10,
  author = "Philip Garnett and Susan Stepney and Francesca Day and Ottoline Leyser",
  title = "Using the {CoSMoS} Process to Enhance an
          Executable Model of Auxin Transport Canalisation",
  pages = "9-32",
  crossref = "CoSMoS10"
)

@proceedings(CoSMoS10,
  editor = "Susan Stepney and Peter Welch and Paul S. Andrews and Adam T. Sampson",
  title = "Proceedings of the 2010 Workshop on Complex Systems Modelling and Simulation,
           Odense, Denmark, August 2010",
  booktitle = "Proceedings of the 2010 Workshop on Complex Systems Modelling and Simulation,
               Odense, Denmark, August 2010",
  publisher = "Luniver Press",
  year = 2010
)